simulariumioΒΆ
- simulariumio package
- Subpackages
- simulariumio.cellpack package
- simulariumio.cytosim package
- simulariumio.data_objects package
- Submodules
- simulariumio.data_objects.agent_data module
- simulariumio.data_objects.binary_data module
- simulariumio.data_objects.camera_data module
- simulariumio.data_objects.dimension_data module
- simulariumio.data_objects.display_data module
- simulariumio.data_objects.frame_data module
- simulariumio.data_objects.histogram_plot_data module
- simulariumio.data_objects.input_file_data module
- simulariumio.data_objects.json_data module
- simulariumio.data_objects.meta_data module
- simulariumio.data_objects.model_meta_data module
- simulariumio.data_objects.scatter_plot_data module
- simulariumio.data_objects.simularium_file_data module
- simulariumio.data_objects.trajectory_data module
- simulariumio.data_objects.unit_data module
- Module contents
- simulariumio.filters package
- Submodules
- simulariumio.filters.add_agents_filter module
- simulariumio.filters.every_nth_agent_filter module
- simulariumio.filters.every_nth_subpoint_filter module
- simulariumio.filters.every_nth_timestep_filter module
- simulariumio.filters.filter module
- simulariumio.filters.multiply_space_filter module
- simulariumio.filters.multiply_time_filter module
- simulariumio.filters.transform_spatial_axes_filter module
- simulariumio.filters.translate_filter module
- Module contents
- simulariumio.mcell package
- simulariumio.medyan package
- simulariumio.nerdss package
- simulariumio.physicell package
- simulariumio.plot_readers package
- simulariumio.readdy package
- simulariumio.readers package
- simulariumio.smoldyn package
- simulariumio.springsalad package
- simulariumio.writers package
- Submodules
- simulariumio.constants module
BINARY_BLOCK_TYPEBINARY_SETTINGSBINARY_SETTINGS.BLOCK_HEADER_N_VALUESBINARY_SETTINGS.BLOCK_OFFSET_BYTE_ALIGNMENTBINARY_SETTINGS.BYTES_PER_VALUEBINARY_SETTINGS.DEFAULT_BLOCK_TYPESBINARY_SETTINGS.FILE_IDENTIFIERBINARY_SETTINGS.FRAME_HEADER_N_VALUESBINARY_SETTINGS.HEADER_CONSTANT_N_VALUESBINARY_SETTINGS.HEADER_N_INT_VALUESBINARY_SETTINGS.HEADER_N_VALUES_PER_BLOCKBINARY_SETTINGS.MAX_BYTESBINARY_SETTINGS.N_BLOCKSBINARY_SETTINGS.SPATIAL_BLOCK_HEADER_CONSTANT_N_VALUESBINARY_SETTINGS.SPATIAL_BLOCK_HEADER_N_VALUES_PER_FRAMEBINARY_SETTINGS.VERSION
CURRENT_VERSIONDEFAULT_CAMERA_SETTINGSDISPLAY_TYPEJMOL_COLORS()SUBPOINT_VALUES_PER_ITEM()V1_SPATIAL_BUFFER_STRUCTV1_SPATIAL_BUFFER_STRUCT.MIN_VALUES_PER_AGENTV1_SPATIAL_BUFFER_STRUCT.NSP_INDEXV1_SPATIAL_BUFFER_STRUCT.POSX_INDEXV1_SPATIAL_BUFFER_STRUCT.POSY_INDEXV1_SPATIAL_BUFFER_STRUCT.POSZ_INDEXV1_SPATIAL_BUFFER_STRUCT.ROTX_INDEXV1_SPATIAL_BUFFER_STRUCT.ROTY_INDEXV1_SPATIAL_BUFFER_STRUCT.ROTZ_INDEXV1_SPATIAL_BUFFER_STRUCT.R_INDEXV1_SPATIAL_BUFFER_STRUCT.SP_INDEXV1_SPATIAL_BUFFER_STRUCT.TID_INDEXV1_SPATIAL_BUFFER_STRUCT.UID_INDEXV1_SPATIAL_BUFFER_STRUCT.VIZ_TYPE_INDEX
VIEWER_DIMENSION_RANGEVIZ_TYPE
- simulariumio.exceptions module
- simulariumio.file_converter module
- simulariumio.trajectory_converter module
TrajectoryConverterTrajectoryConverter.add_number_of_agents_plot()TrajectoryConverter.add_plot()TrajectoryConverter.calculate_scale_factor()TrajectoryConverter.center_and_scale_agent_data()TrajectoryConverter.center_fiber_positions()TrajectoryConverter.check_report_progress()TrajectoryConverter.filter_data()TrajectoryConverter.get_min_max_positions()TrajectoryConverter.get_subpoints_xyz()TrajectoryConverter.get_xyz_max()TrajectoryConverter.get_xyz_min()TrajectoryConverter.save()TrajectoryConverter.save_plot_data()TrajectoryConverter.scale_agent_data()TrajectoryConverter.to_JSON()
- simulariumio.utils module
- Module contents
- Subpackages