visualization.combined_trajectory¶
Visualization methods for combined simulators.
Module Attributes
Bounding box size for combined simulator trajectories. |
Functions
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Visualize combined simulations from ReaDDy and Cytosim for select conditions and number of replicates. |
- BOX_SIZE: ndarray = array([600., 600., 600.])¶
Bounding box size for combined simulator trajectories.
- visualize_combined_trajectories(buckets: dict[str, str], series_name: str, condition_keys: list[str], replicates: list[int], n_timepoints: int, simulator_colors: dict[str, str], temp_path: str, metrics: list[CompressionMetric] | None = None, recalculate: bool = False) None[source]¶
Visualize combined simulations from ReaDDy and Cytosim for select conditions and number of replicates.
- Parameters:
buckets – Names of S3 buckets for input and output files for each simulator and visualization.
series_name – Name of simulation series.
condition_keys – List of condition keys.
replicates – Simulation replicates ids.
n_timepoints – Number of equally spaced timepoints to visualize.
simulator_colors – Map of simulator name to color.
temp_path – Local path for saving visualization output files.
metrics – List of metrics to include in visualization plots.
recalculate – True to recalculate visualization files, False otherwise.