visualization.tomography

Visualization methods for tomography data analysis.

Module Attributes

TOMOGRAPHY_VIZ_SCALE

Spatial scaling factor for tomography visualization.

Functions

visualize_tomography(bucket, name, temp_path)

Visualize segmented tomography data for actin fibers.
TOMOGRAPHY_VIZ_SCALE: float = 100.0

Spatial scaling factor for tomography visualization.

visualize_tomography(bucket: str, name: str, temp_path: str, metrics: list[CompressionMetric] | None = None) → None[source]

Visualize segmented tomography data for actin fibers.

Parameters:

  • bucket – Name of S3 bucket for input and output files.

  • name – Name of tomography dataset.

  • temp_path – Local path for saving visualization output files.

  • metrics – List of metrics to include in visualization plots.