visualization.fiber_points

Methods for visualizing fiber points.

Functions

generate_trajectory_converter_for_fiber_points(...)

Generate a TrajectoryConverter for the given fiber points.
generate_trajectory_converter_for_fiber_points(fiber_points: list[ndarray], type_names: list[str], meta_data: MetaData, display_data: dict[str, DisplayData], time_units: UnitData, spatial_units: UnitData, fiber_radius: float = 0.5) → TrajectoryConverter[source]

Generate a TrajectoryConverter for the given fiber points.

Parameters:

  • fiber_points – List of fibers, where each fiber has the shape (timesteps x points x 3).

  • type_names – List of type names.

  • meta_data – Simularium metadata object.

  • display_data – Map of type names to Simularium display data objects.

  • time_units – Time unit data.

  • spatial_units – Spatial unit data.

  • fiber_radius – Radius to render fiber.

Returns:

Simularium trajectory converter.