Visualization workflow notebooks¶

Visualization¶

Visualization of simulation trajectories and data using Simularium.

Individual simulations¶

Visualize ReaDDy simulation trajectories (source | notebook)
Visualize Cytosim simulation trajectories (source | notebook)

Combined simulations¶

Visualize combined ReaDDy and Cytosim simulation trajectories (source | notebook)

Tomography data¶

Visualize actin CME tomography data (source | notebook)

Dimensionality reduction¶

Visualize dimensionality reduction analysis of actin filaments (source | notebook)